I’ve updated my collection of templates for Windows Phone 8.1 apps with two new templates. I’ve corrected most if not all of the UX issues with the shipped Visual Studio 2013 Update 2Rc for the “Hub App (Windows Phone)” and “Pivot App (Windows Phone)” templates. The changes mainly involves margin changes and continuum animation fixes.
Download and install the correct templates here. It’s recommended to just overwrite older versions of my templates.